A dirty little secret

Like many, I was interested last week by the announcement that a University of Connecticut professor responsible for some of the research on resveratrol, a plant-based phenolic compound linked to various health benefits, had been accused of falsifying and fabricating data.  According to published reports, UConn officials found 145 cases of faked data that turned up in 26 published research articles by Dr. Depak Das.  Resveratrol occurs in many plants but most notably in grape skins and seeds, and one of the compounds associated with health benefits of red wine.   

http://www.cbsnews.com/8301-504763_162-57357720-10391704/red-wine-researcher-dr-dipak-k-das-published-fake-data-uconn/

Needless to say, reports of Dr. Das’s wrongdoing were disappointing to those of us that enjoy an occasional glass of Caberbet Sauvignon or Merlot.  More importantly, although Dr. Das’s research was a relatively minor part of the resveratrol story, these types of reports invariably provide grist for the mill for those that like to question the motives and veracity of scientists.  Only Dr. Das can ultimately comment on his motivation for the con job.  Dr. Das is a tenured professor and head of his university’s Cardiovascular Research Center so presumably career advancement was not a primary factor in the ruse.

In theory, a well designed and well executed study that provides useful results should be publishable.  In reality, the adage that ‘it’s difficult to publish negative results’ often proves true.  I’m not familiar with Dr. Das’s studies or the data he’s reported to have faked, but suppose, for example, he had found that resveratrol did not reduce heart attack risk.  Assuming the trials were experimentally valid, there is still value in that knowledge; it could save others from conducting expensive but likely fruitless research or it may suggest other avenues of research.   Unfortunately, it’s often easier to publish positive results and use those data as the basis for future grant development.  I’m not privy to all the details at this juncture, but I wouldn’t be surprised if this started off as fudging a few numbers, which, in turn, formed the basis for other proposals and started a self perpetuating cycle.

As I noted, Dr. Das is an established scientist near the top of his game.  But the need to keep science clean extends to all levels.  In some regards, the pressure to fudge data is greatest at the entry level.  At research intensive universities, young assistant professors must generate enough grant funding and publications to secure tenure within six years of their hire.  Denial of tenure means time to hit the road.  Many universities are even opting to not reappoint some new faculty at the three-year mid-point review, which was often perceived as a ‘rubber stamp’ in the past.

Falsifying data in science is analogous to gambling in sports.  Both represent the ‘third rail’.  People wonder why baseball came down so hard on Pete Rose.  Once gambling is introduced in sports, fans assume the outcome is predetermined and the sport is done.  Likewise, science runs the risk of becoming irrelevant if the public assumes that researchers are only going to conclude whatever will get them published or help them land the next grant.  It sounds like UConn and the US Office of Research Integrity are preparing to throw the book at Dr. Das.  If he’s guilty as charged, they have to.

Noxious or not? A continuance of the Canada thistle discussion

Ray Eckhart, Master Gardener and loyal blog reader, wrote a long response to Alan’s request for research for the ongoing debate on Canada thistle started a few weeks ago by Jeff. Because he has a lot of links to research in his response, I thought it should have its own posting. So here’s Ray:

Here is a brief summary of the results of a google search of .edu and .gov or .us sites on the subject of Canada thistle or Cirsium arvense as a noxious weed, examining the “whys” by a mostly volunteer* Master Gardener reliant on published literature by reputable sources and charged with fulfilling the Land Grant University charter to bring science based information to the local level.

(* about $6500 of my annual salary and benefits comes from fulfilling Master Gardener responsibilities.)

From the Minnesota pdf referenced above:
“Noxious weeds are difficult to control and injurious to public health, the environment, roads, crops, livestock and property. By law, these weeds must be controlled on all public and private lands.”

From Montana:
“Canada thistle threatens productivity in both crop and non-croplands. In cropland, Canada thistle causes extensive yield losses through competition for light, nutrients, and moisture. It also increases harvesting problems due to seed and forage contamination. In Montana, it is estimated that two shoots per square yard can reduce wheat yield by 15 percent and 25 shoots per square yard can reduce wheat yield by 60 percent. Other Montana crops seriously threatened by Canada thistle include peas, corn, beans, alfalfa and sugar beets. Heavy infestations are also commonly found in overgrazed pastures and ranges and may crowd-out and replace native grasses and forbs, decreasing species diversity in an area.

“By 1795, Vermont enacted noxious weed legislation against Canada thistle and, in the early 1900’s, the currently named Noxious Weed Act gave a person the right to eradicate this species wherever they found it without fear of trespassing.

“In alfalfa stands grown for seed production, Canada thistle can reduce yield by 48 percent. An extra ten percent yield reduction can occur in alfalfa seed production due to seed cleaning. In pastures, Canada thistle reduces productivity by crowding out forage species with spiny leaves that deter cattle from grazing. In non-cropland ecosystems, Canada thistle can crowd out and replace native grasses and forbs limiting land’s recreational use. In gardens, flower beds, and lawns, Canada thistle’s extensive root system makes it a hassle to control. Mowing or pulling this weed is not effective because it grows again from vegetative buds on the roots. In fact, improper cultivation can even worsen Canada thistle problems!”

From Pennsylvania:
“In the Northeast, several weeds including bull and musk thistle, Canada thistle, purple loosestrife (Lythrum salicaria), mile-a-minute (Polygonum perfoliatum), and garlic mustard (Allaria petifolia) are receiving attention [for biological control efforts – ed.] because of their invasive nature.”

2nd Cite for Pennsylvania:
ECOLOGICAL THREAT: Natural communities that are threatened by Canada thistle include non-forested plant communities such as prairies, barrens, savannas, glades, sand dunes, fields and meadows that have been impacted by disturbance. As it establishes itself in an area, Canada thistle crowds out and replaces native plants, changes the structure and species composition of natural plant communities and reduces plant and animal diversity. This highly invasive thistle prevents the coexistence of other plant species through shading, competition for soil resources and possibly through the release of chemical toxins poisonous to other plants.

“Canada thistle is declared a “noxious weed” throughout the U.S. and has long been recognized as a major agricultural pest, costing tens of millions of dollars in direct crop losses annually and additional millions costs for control. Only recently have the harmful impacts of Canada thistle to native species and natural ecosystems received notable attention.”

Idaho:
“Some noxious or invasive weeds are highly toxic to equines, however, and can cause tremendous problems if allowed to invade horse pastures. This may be partially due to the extensive taproot in many broadleaf weeds that allow them to remain green longer into the dry season, thereby appearing potentially attractive to horses grazing in poor pastures. This list includes tansy ragwort, yellow starthistle, Russian knapweed, Canada thistle (Cirsium arvense), poison hemlocks, field bindweed, houndstongue, Scotchbroom (Cytisus scoparius), horsetails, leafy spurge, black henbane (Hyoscyamus niger), Klamath weed or St. Johnswort, kochia, yellow toadflax or butter-and-eggs (Linaria vulgaris), silverleaf nightshade (Solanum elaeagnifolium), and puncture vine.”

Colorado: “Canada thistle (Cirsium arvense) is an aggressive, creeping perennial weed that infests crops, pastures, rangeland, roadsides and noncrop areas. Generally, infestations start on disturbed ground, including ditch banks, overgrazed pastures, tilled fields or abandoned sites. Canada thistle reduces forage consumption in pastures and rangeland because cattle typically will not graze near infestations. In 2002, the Colorado Department of Agriculture surveyed counties and while incomplete, the results showed more than 100,000 acres infested with Canada thistle (Figure 1).”

2nd cite Colorado:
“Impacts Agricultural: Canada thistle is an aggressive, creeping, perennial weed. It infests crops, pastures, rangelands, roadsides, and riparian areas (Beck 1996).

“Ecological: Canada thistle spreads rapidly through horizontal roots, which give rise to shoots (Moore 1975). Its root system can be extensive, growing horizontally as much as 18 feet in one season (Nuzzo 1998). Most Canada thistle patches spread at a rate of 3-6 feet/year, crowding out more desirable species and creating thistle monocultures.

“Human: Spiny thickets of Canada thistle can restrict recreational access to infested areas.”

South Dakota:
“Noxious weeds are found in range and pasture as well as noncrop areas and cropland. Troublesome statewide noxious weeds like Canada thistle, leafy spurge, perennial sow thistle, Russian knapweed, and hoary cress can be serious problems in pasture and rangeland.”

Kentucky:
“Weeds can reduce the quantity and the stand life of desirable forage plants in pastures and hayfields. These unwanted plants are often more aggressive than existing or desired forage species and compete for light, water, and nutrients. Weeds can also diminish the quality and palatability of the forage available for livestock grazing, and certain weed species are potentially poisonous to grazing animals. The aesthetic value of a pasture is also impacted by weeds.

“The state regulations of the Kentucky Seed Law classify certain plants such as Canada thistle, johnsongrass, and quackgrass as noxious weeds and prohibit their presence in commercial seed sold in Kentucky.”

National Park Service:
“Thistles are pioneer species and are most often found in sites where the ground cover has been disturbed by grazing, erosion, traffic, or other means. Thistles reduce the use of an area for grazing or recreational purposes because of the prominent spines on leaves, stalks, and blooms. Livestock do not eat thistles and will not graze between thistle plants on more desirable forage (Batra 1982).”

Invasive.org (linked from .gov sites):
“THREATS POSED BY THIS SPECIES: Natural areas invaded by Cirsium arvense include prairies and other grasslands in the midwest and Great Plains and riparian areas in the intermountain west. Cirsium arvense threatens natural communities by directly competing with and displacing native vegetation, decreasing species diversity, and changing the structure and composition of some habitats. Species diversity in an “undisturbed” Colorado grassland was inversely proportional to the relative frequency of Canada thistle (Stachion and Zimdahl 1980). Canada thistle invades natural communities primarily through vegetative expansion, and secondarily through seedling establishment. Cirsium arvense presents an economic threat to farmers and ranchers. Infestations reduce crop yield through competition for water, nutrients and minerals (Malicki and Berbeciowa 1986) and interfere with harvest (Boldt 1981). In Canada, the major impact of Cirsium arvense is in agricultural land, and in natural areas that have been disturbed or are undergoing restoration (White et al. 1993). In the U.S., it is a host for bean aphid and stalk borer, insects that affect corn and tomatoes (Moore 1975), and for sod-web worm (Crampus sp.) which damages corn (Detmers 1927). In Bulgaria Cirsium arvense is a host for the cucumber mosaic virus (Dikova 1989). In addition to reducing forage and pasture production, Canada thistle may scratch grazing animals, resulting in small infections (Moore 1975).”

Washington State:
“Why is it a noxious weed? Once established, it spreads quickly replacing native plants. It grows in circular patches, spreading vegetatively through roots which can spread 10 -12′ in one season. It poses an economic threat to the agriculture industry by reducing crop yields.”

Virginia:
“Threats: Canada thistle’s rapid growth aggressively competes with native plants and crops for nutrients, moisture and light. It releases chemicals toxic to other plants. The result is a loss of natural diversity. It is known to harbor other pest species, e.g., insects, and has long been recognized as an agricultural est. Both natural and human caused disturbances can create the opportunity for Canada thistle to become established in natural communities.”

Ohio:
“PROBLEM: The extensive root system of Canada thistle allows it to out-compete and displace many native species, especially in degraded prairies where native species are not well established. Spreading both by seed and rhizome, Canada thistle can create monocultures covering large areas. The wind-dispersed seeds may remain viable for 20 years or more, allowing it to spread quickly and making it difficult to eradicate.”

There are more, but I stopped on page 3 of the 120 page result of the google .edu search. I’ll leave it to others more qualified than I am to further debate the relative merits of why or why not a more cavalier (heh!) approach other than current government regulatory action is or is not warranted.

Eco Plant Pals?

Last Monday a friend of mine stopped by the office and dropped off a couple of plant "kits" for my kids.  I didn’t spend much time looking at them at first, but I brought them out that night when I got home to show to the family and…they’re really neat!  Called Eco Plant Pals, these little kits include a container, some media, and some seeds for one of 18 different plants.  Each of these plants has their own names, like Chris Catnip for (you guessed it) a catnip plant and Laura Lobelia.  It’s all about the marketing with cute pictures and names.  See all of the cute kits here.

 I’ll tell you right from the start that they cost too much (retail anyway), but they’re cute, and the girls are excited to plant them, so what can I say?  I believe that anything that gets kids excited about planting is a good thing.  Everything in the kit is biodegradable which is nice.  I do have one complaint though.  Not a huge one, but one worth mentioning all the same.  Plant number 18 is Butterfly Beth and it’s a butterfly bush.  As many of you know I absolutely love butterfly bush, but I am also aware that in certain parts of the country this shrub is considered an invasive plant.  While all of the other plants are, as far as I can tell, pretty benign (most are annuals — there is a Robert Redwood though!) I have to question calling Butterfly Beth a good choice ecologically.

Yes, she’s an invasive, but isn’t she cute!

The fun and the not so fun

Just a quick post today.  Today is the second Monday in January which means: 1) classes resume here at MSU and 2) it’s the first day of the Great lakes Trade EXPO in Grand Rapids, which is sponsored by the Michigan Nursery and Landscape Association and Michigan Turf Foundation.  I’m on tap for two presentations this afternoon.  

The first one is a bit of post-mortem on the Imprelis issue that dominated some of our lives back in the summer.  My talk, "Imprelis: What went wrong?’ looks back over the development of the Imprelis debacle.  The final verdict on how the EPA allowed the registration on an herbicide with such devastating non-target effects probably won’t be fully known until the dust settles on the legal process. Bottom line: the testing that was done was not adequate and either DuPont or the EPA (or both) dropped the ball.

My second talk, thankfully, is a little more upbeat.  In "Little Big Men" I discuss the use of miniature and dwarf conifers for landscaping.  I even get to talk about one of my new interests: railway gardening.  I haven’t taken the plunge yet – not enough time or nearly enough money – but I think I may have found a hobby for retirement.  For those that have access to the Oregon Association of Nurseries Digger magazine, Elizabeth Peterson wrote a very nice feature on railway gardens in their September issue.
 
Courtesy: Elizabeth Peterson
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Canadian Thistle

It has been a busy few weeks for me — holiday traveling, Green Expo talks (that’s our regional conference), and getting ready for a semester leave this year — I’ll be working on a project investigating how professors transfer information to the public.  But during this time I have, for some unexplainable reason, been thinking about Canadian Thistle.  And do you know what I’ve come up with?  This: 

It’s a colossal waste of time and money to worry about Canadian thistle. 

Despite its name Canadian thistle is not native to North America.  It was introduced in the 1600s — probably by accident.  Most parts of the plant are edible and some people even say that it’s tasty.   Though it can be found across the US it is rarely found in such high concentrations that it displaces native species.  Where it does dominate the landscape conditions are usually bad enough (highly disturbed sites) that other plants won’t fare well anyway.  Canadian thistle is known as an early succession plant which means that it will establish in a disturbed site — perhaps even taking it over — but will slowly, over years, be taken over by other plants.

Canadian thistle is considered a noxious weed across the United States, but it is classified that way mostly because of political pressure rather that for what it does (if nothing else it is a very visible, nasty looking plant).  People may get scratched up, but you won’t hear about anyone dying from Canadian thistle poisoning.  As an agricultural weed it can be significant, but usually pales in comparison to other weeds.  Because it is listed as a noxious weed some states and local governments have tried to rein it in, at least over small areas, but this thistle is very resistant to herbicides, and tough to kill just by pulling, and so efforts are often fruitless. 

Should we redouble our efforts and assail this thistle with more energy?  I just can’t bring myself to say yes.  This weed may be undesirable, but to put much money into a losing battle with a weed that has been here for about 400 years and that mostly affects disturbed sites seems like a silly strategy.  In my mind we should be treating this weed as undesirable, but not nearly at the same level as other invasive or noxious plants.</d

Want healthier babies? Plant trees!

NOTE: Linda and I switched places this week so we could get the Garden Professors survey up on Monday – See Linda’s post for the link – please take a minute to give us your feedback!

I recently received a copy of a newsletter from the USDA Forest Service Pacific Northwest Research Station that included a summary of an article recently co-authored by one of the Station’s scientists on the effect of urban tree cover on pregnancy outcomes of new mothers in Portland, OR http://www.fs.fed.us/pnw/sciencef/scifi137.pdf

According to the summary, researcher Geoffrey Donovan and his colleagues found that babies born to pregnant mothers who lived in neighborhoods with high amounts of tree cover were more likely to have higher birth weights than babies born to mothers living in areas with less tree cover.  Of course, being a skeptical (cynical?) Garden Professor my first reaction was, “Well, duh…expectant mothers that live in areas with more tree cover are probably living in better neighborhoods, are wealthier, better educated, and have lots of other things going for them that we typically associate with better pregnancy outcomes.” 

The summary put out in the PNW Station newsletter was scant on these details so I went on-line and dug out the original paper (citation below).  As I suspected the authors noted that, “Women with greater access to urban trees were more likely to be non-Hispanic white, younger, have fewer previous births, and live in newer, more expensive houses closer to private open space compared to women with less access to urban trees.”  However, they were able to account for these effects in their statistical analysis and still found that birth weight increased with the amount of tree cover near the mothers’ homes.

As we’ve all heard many times, correlation is not causation and it is unclear exactly how tree cover improves pregnancy outcomes.  One of the most likely explanations for the tree cover effect is that having more trees around reduces stress levels, resulting in better birth outcomes.  Trees can also reduce noise and other forms of pollution as well.  Regardless of the mechanism, this study may provide one more bit of ammunition for urban forestry advocates that go to battle for trees in our cities.

Donovan, G.H.; Michael, Y.L.; Butry, D.T.;Sullivan, A.D.; Chase, J.M. 2011. Urban trees and the risk of poor birth outcomes. Health & Place. 17(1): 390–393.

PS: Don’t forget to take our survey!

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Last minute items for gardeners

I am a last minute shopper.  There, I admitted it, and I’m proud of it.  By waiting until the last minute I get to hear about everyone else’s great gifts — and then buy those same gifts for someone else!  that said, here’s a short list of gifts for gardeners — including a few that I wouldn’t mind having myself.

#1  Books — they’re great, especially in the off-season when the gardener in your life needs some inspiration.  Naturally books by a garden professor is preferred, but I also love anything by Lee Reich.  Another one of my new favorites is the book Taming the Truffle.  For something different try The Foragers Harvest by Samuel Thayer.

#2 Pruners — You can NEVER have enough pruners.  There are many nice pruners out there, but the standard by which all others are measured are the Felco #2s.

#3 Gloves — you can never have too many gloves!  I prefer leather — most gardeners have their personal preferences.

#4 Weird seeds.  OK, it’s a little late to be searching high and low — but most gardeners really love to try new things — so go and get ’em something totally off the wall.  Something beyond tomatoes, cucumbers, squash and watermelons (peanuts maybe).  See if you can find Pawpaw!

#5  A renewable organic fertilizer — not guano or rock phosphate.  Something like cotton seed meal.  Manure is probably a no-no though.  Who wants poo in their stockings?

#6  Moisture sensors of all different types can be fun to play with.

#7  Some fun houseplants — Amaryllis is always a winner – even for non-gardeners!  For the more adventurous look to carnivorous plants like butterwort or even a venus flytrap.

Happy Holidays Everyone!

I’m dreaming of a white Christmas

One thing I’ve always enjoyed about living in Michigan is that we are virtually guaranteed to have a white Christmas each year.  This is in stark contrast to western Washington where I grew up where a white Christmas was a relatively rare event.  In fact, to make the locals feel better, one of the popular songs on the radio play lists during the holidays is “Christmas in the Northwest is a gift God wrapped in green.”  Actually, He usually wraps it in grey fog or drizzle but hey, it’s a nice sentiment.

And for the Great Lakes region and much of the eastern US, a white Christmas may not turn out to be such a sure thing after all.  Snowfall in the East is way off compared to last year.  According to data from National Operational Hydrologic Remote Sensing Center http://www.nohrsc.noaa.gov/nsa/index.html?region=Northern_Great_Lakes&year=2011&month=12&day=14&units=e , only about one-third (33.7%) of the Great Lakes region had snow cover as of last week and the average depth was only 0.9”.

This is quite a difference from a year ago in mid-December when 99.7% of the Great Lakes region was covered with an average of 9” of snow.

Of course, this is Michigan and things can change in hurry.  But right now the forecast for the next couple days is for temps in the upper-30’s and low 40’s.  There’s a chance of snow showers on Saturday so we’ll keep our fingers crossed and hang our hats on a Christmas eve snow for our White Christmas.

May your days be merry and bright, and may all your Christmases be white!

The sorry state of whole plant physiology

Okay, I’m biased:  I’m a whole plant physiologist, meaning that I like to study entire plants in their environment, not just their cells or DNA in a lab.  I got hooked on plants as an undergraduate in marine biology when I took plant physiology for “fun” (translated: I couldn’t find another biology elective to fill the time slot).  Discovering why vines curl around fenceposts (thigmotropism) or how plants sense gravity (statoliths) or why bilaterally symmetrical flowers evolved (to accomodate pollinators) was fascinating, and I finally succumbed to the green side when I entered my PhD program.

The book I used as a student was Salisbury & Ross’s Plant Physiology.  There were other texts out there, but this was my bible and I used newer editions when I began to teach Plant Physiology.  Recently (as some of you know) I’ve begun to write a garden book on how plants work.  Plant physiology, of course, is the underlying science, and I needed a new text for fact checking.

Salisbury and Ross, sadly, has not been updated since 1991, so I went with Taiz and Zeiger (which has also been around a long time).  It was a shock for me to discover that plant physiology has somehow morphed into plant molecular biology.  The books is full of gene acronyms and regulatory pathways…but very little of what fascinated me as a student.

Science has been on the reductionist pathway for a long time, and there’s no denying that understanding how genes are regulated is important.  But except for the fields of human and veterinary medicine, we’re losing our understanding of how organisms work.  Faculty experts who specialized in studying algae or mosses or grasses or trees for the sole purpose of increasing our understanding of these species have been replaced with those whose research programs can generate big dollars for cash-strapped universities.  The void left by academia’s abandonment of practical plant science is quickly filled with pseudoscience and mysticism, particularly in alternative agriculture.

All I can say is that if I had been confronted with the 2010 Taiz and Zeiger text as an undergraduate I would have a PhD in marine biology instead.

Another victory for the politics of destruction

Last Christmas tree post for me this year and, sadly, it’s not a pleasant one.  As reported by that beacon of journalistic integrity, FOX news, right-wing bloggers killed a marketing check-off program that US Christmas tree producers had worked years to enact.

 http://www.foxnews.com/politics/2011/11/09/merry-christmas-agriculture-department-imposes-christmas-tree-tax/

 

For those that are not familiar, a check-off program or agriculture marketing order is an assessment that a commodity group levies against itself to raise money for marketing and research.  Common examples of marketing campaigns associated with check-off programs are “Pork – the other white meat”, “Beef – it’s what’s for dinner”, “the incredible edible egg”, and “Got milk?”  In the case of the Christmas tree check-off, growers voted to assess themselves a 15-cent fee for each tree harvested to go into fund to support a marketing campaign and research.  A majority of US growers felt the program was a good idea in order to promote their product against foreign-produced artificial trees.  The USDA gets involved in these programs essentially as a neutral third party to help collect the fees and oversee the operation of the marketing board, which is made up of growers and grower-elected representatives.  If the growers didn’t like how the program was working out, they had the option to kill the check-off after three years.

 

All sounds pretty reasonable and rational, right?  It did until right-wing blogger David Addington stumbled up the marketing order in the Federal Register and dubbed it “Obama’s Christmas tree tax”.  http://blog.heritage.org/2011/11/08/obama-couldnt-wait-his-new-christmas-tree-tax/   Once ‘Obama’ and ‘tax’ hit the blogosphere you might as well cue up Don Meredith signing ‘Turn out the lights, the party’s over.’  Just in time for the holiday news cycle, media outlets all over the country pounced on the story.

 

The ironies are to numerous to mention all of them, but here are just a few.  I attended a regional meeting of growers when the check-off was being debated.  Except for the university scientists and extension observers on-hand, the number of people in the room that voted for Obama in the last election was roughly zero.  Moreover, it was the US growers themselves, not Obama or the USDA that pushed for the check-off.  To the best my knowledge, both the President and the USDA have enough on their plates already without sitting around thinking “You know, announcing a tax on Christmas trees right before Christmas would be a good idea”.

 

While ironies abound, so do disappointments.  The administration, with little to gain except a lot of negative and misinformed press, quickly washed its hands of the proposal.  This means the US producers; many of whom had invested years developing and championing the marketing program to stave off competition from China, are left back at square one.  In fact, after the traction given to the right-wing portrayal of their self-assessment as ‘Obama’s tax’, US growers are now a couple steps behind square one.  And it’s doubtful they’ll be able to get back to the start line any time soon.